Move the climate record from parquet to TimescaleDB hypertables (#227)
Replace the per-cell parquet cache with TimescaleDB hypertables as the
production backend for the raw daily climate record, and drop pg_duckdb.
Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a
Postgres URL (dev, tests, offline tooling), the same dialect switch the
accounts DB and derived store already use, so CI stays Postgres-free.
- data/climate_store.py: psycopg + polars bridge over climate_history
(a hypertable), climate_recent, and climate_sync (per-cell freshness).
Reads via pl.read_database, writes via COPY + ON CONFLICT upsert;
fail-soft to a cache miss so a DB hiccup degrades to upstream refetch.
- data/climate.py: route every cache/mtime touchpoint through a backend
dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the
stale-serve path still avoids bumping it, so derived-payload tokens
invalidate on exactly the same events as before.
- alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema
(compression policy on year-old chunks), guarded to no-op off Postgres.
- migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the
parquet cache into the hypertables, preserving file mtimes as sync
timestamps so recent_stamp is unchanged across cutover.
- db image -> stock timescale/timescaledb:latest-pg18; drop the custom
pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb
tuning GUC. Docs updated for the new backend and cutover.
Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
|
|
|
# Thermograph DB — TimescaleDB (PostgreSQL 18)
|
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The `db` service runs the stock **`timescale/timescaledb:latest-pg18`** image
|
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|
(TimescaleDB 2.24+, genuine PostgreSQL 18). The app's climate record lives here in
|
|
|
|
|
**hypertables** — the DB, not the filesystem, is the source of truth:
|
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|
- **`climate_history`** — a hypertable of the full daily archive per grid cell
|
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|
(`cell_id, date, tmax, tmin, precip, wind, gust, humid, fmax, fmin, feels`), back
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|
to 1980. Durable/LOGGED (a 45-year, rate-limited refetch is expensive),
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range-partitioned on `date` (5-year chunks), compressed for chunks older than a
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|
year.
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|
- **`climate_recent`** — the recent-observations + forward-forecast bundle (a plain
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table: it holds future dates and is rewritten hourly).
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- **`climate_sync`** — per-cell freshness (epoch seconds) that replaces the old
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parquet file mtimes: it drives the hourly history top-up, the 1-hour forecast
|
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TTL, and the `recent_stamp` token embedded in derived-payload validity.
|
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The schema is created by Alembic (`backend/alembic/versions/0002_climate_hypertables.py`,
|
docs: correct file references and the dev reachability claim
Audited the five CLAUDE.md files and all twenty-one README.md files against the
tree, machine-checking every in-repo path they name and verifying the testable
claims against the live hosts.
The one that matters is in the root file: dev was documented as reachable on
the mesh at 10.10.0.2:8137. It is not, and never was from anywhere but vps1 —
infra/docker-compose.yml binds the port to 127.0.0.1, and the address answers
from neither vps2 nor vps1 itself. Anyone following it gets a connection
refused with nothing to explain it.
The rest are stale paths, several from the reunification:
* assetlinks.json moved under frontend/static/ in the subtree merge; the TWA
README kept the pre-merge path in both places it names it. Following it
would put the file where nothing serves it and Android app-link
verification would fail silently.
* push.py and notify.py now live in backend/notifications/.
* INFRA.md and deploy/stack/README have never existed in this repo, in any
branch.
* the Caddyfile is at deploy/stack/lb/Caddyfile.
* three bare relative paths that resolve for a reader but not from the
directory the file sits in: units.js is the frontend's, deploy.sh is
infra's, entrypoint.sh is the backend's.
Also records why mesh clients must pin the ROOT_URL host and not only the image
host: the registry's bearer-token realm follows ROOT_URL, so pinning
git.thermograph.org alone still sends the token request out the public route,
where the /v2/* matcher returns 403 and docker falls back to anonymous. That
surfaces as `unauthorized: reqPackageAccess`, indistinguishable from a bad
credential.
Verified true and left alone: the four-domain layout, both .claude runbooks,
the absence of any domain-level .forgejo directory, the pinned compose project
name, the deploy contract, prod's eight stack services, beta's five prefixed
ones with no db of its own, dev's five, and every documented make target.
2026-08-01 18:49:28 +00:00
|
|
|
run at app boot via `backend/deploy/entrypoint.sh`). The app reads/writes it through
|
Move the climate record from parquet to TimescaleDB hypertables (#227)
Replace the per-cell parquet cache with TimescaleDB hypertables as the
production backend for the raw daily climate record, and drop pg_duckdb.
Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a
Postgres URL (dev, tests, offline tooling), the same dialect switch the
accounts DB and derived store already use, so CI stays Postgres-free.
- data/climate_store.py: psycopg + polars bridge over climate_history
(a hypertable), climate_recent, and climate_sync (per-cell freshness).
Reads via pl.read_database, writes via COPY + ON CONFLICT upsert;
fail-soft to a cache miss so a DB hiccup degrades to upstream refetch.
- data/climate.py: route every cache/mtime touchpoint through a backend
dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the
stale-serve path still avoids bumping it, so derived-payload tokens
invalidate on exactly the same events as before.
- alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema
(compression policy on year-old chunks), guarded to no-op off Postgres.
- migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the
parquet cache into the hypertables, preserving file mtimes as sync
timestamps so recent_stamp is unchanged across cutover.
- db image -> stock timescale/timescaledb:latest-pg18; drop the custom
pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb
tuning GUC. Docs updated for the new backend and cutover.
Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
|
|
|
`backend/data/climate_store.py` (psycopg + polars). See
|
|
|
|
|
`deploy/POSTGRES-MIGRATION.md` for the parquet→hypertable cutover.
|
|
|
|
|
|
|
|
|
|
## Why the stock image (no custom Dockerfile)
|
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|
|
|
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|
|
The previous DB image was a custom `pgduckdb/pgduckdb:18` build whose only purpose
|
|
|
|
|
was ad-hoc `read_parquet()` over the parquet cache. Now the climate record is in
|
|
|
|
|
real tables, so that capability is gone and the DB is the **stock TimescaleDB
|
|
|
|
|
image** — no build step. The image already sets
|
|
|
|
|
`shared_preload_libraries=timescaledb`; never `ALTER SYSTEM SET
|
|
|
|
|
shared_preload_libraries` (it would land in `postgresql.auto.conf` and override the
|
|
|
|
|
image's preload).
|
Containerize the app and move the databases to PostgreSQL 18 (#220)
Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the
data layer on Postgres, while keeping the test suite on SQLite.
- accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write +
read-only asyncpg pair (the RO engine pins read-only transactions, used by the
pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the
SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL
is unset). models.py: boolean server_default -> sa.false().
- store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg
when configured, else the existing raw-sqlite3 paths byte-for-byte; sync
interfaces and every fail-soft contract preserved.
- Alembic (backend/alembic/) manages the accounts schema; the container entrypoint
runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py
copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced),
skips access_token, and resets identity sequences.
- Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137)
and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet
climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet').
- deploy.sh/thermograph.service rewired to manage the compose stack; env example,
Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook.
Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was
verified via docker compose: alembic migrations, register/login, the RO endpoint,
store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
|
|
|
|
|
|
|
|
## Files here
|
|
|
|
|
|
Move the climate record from parquet to TimescaleDB hypertables (#227)
Replace the per-cell parquet cache with TimescaleDB hypertables as the
production backend for the raw daily climate record, and drop pg_duckdb.
Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a
Postgres URL (dev, tests, offline tooling), the same dialect switch the
accounts DB and derived store already use, so CI stays Postgres-free.
- data/climate_store.py: psycopg + polars bridge over climate_history
(a hypertable), climate_recent, and climate_sync (per-cell freshness).
Reads via pl.read_database, writes via COPY + ON CONFLICT upsert;
fail-soft to a cache miss so a DB hiccup degrades to upstream refetch.
- data/climate.py: route every cache/mtime touchpoint through a backend
dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the
stale-serve path still avoids bumping it, so derived-payload tokens
invalidate on exactly the same events as before.
- alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema
(compression policy on year-old chunks), guarded to no-op off Postgres.
- migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the
parquet cache into the hypertables, preserving file mtimes as sync
timestamps so recent_stamp is unchanged across cutover.
- db image -> stock timescale/timescaledb:latest-pg18; drop the custom
pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb
tuning GUC. Docs updated for the new backend and cutover.
Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
|
|
|
- **`init/10-timescaledb.sql`** — `CREATE EXTENSION IF NOT EXISTS timescaledb;`
|
|
|
|
|
(runs from `/docker-entrypoint-initdb.d` on first cluster init; Alembic also does
|
|
|
|
|
this idempotently at boot).
|
|
|
|
|
- **`init/20-tuning.sh`** — scales `shared_buffers` (25%), `effective_cache_size`
|
|
|
|
|
(75%), `work_mem`, and `maintenance_work_mem` from `DB_MEMORY` via `ALTER SYSTEM`.
|
Containerize the app and move the databases to PostgreSQL 18 (#220)
Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the
data layer on Postgres, while keeping the test suite on SQLite.
- accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write +
read-only asyncpg pair (the RO engine pins read-only transactions, used by the
pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the
SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL
is unset). models.py: boolean server_default -> sa.false().
- store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg
when configured, else the existing raw-sqlite3 paths byte-for-byte; sync
interfaces and every fail-soft contract preserved.
- Alembic (backend/alembic/) manages the accounts schema; the container entrypoint
runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py
copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced),
skips access_token, and resets identity sequences.
- Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137)
and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet
climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet').
- deploy.sh/thermograph.service rewired to manage the compose stack; env example,
Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook.
Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was
verified via docker compose: alembic migrations, register/login, the RO endpoint,
store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
|
|
|
|
Move the climate record from parquet to TimescaleDB hypertables (#227)
Replace the per-cell parquet cache with TimescaleDB hypertables as the
production backend for the raw daily climate record, and drop pg_duckdb.
Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a
Postgres URL (dev, tests, offline tooling), the same dialect switch the
accounts DB and derived store already use, so CI stays Postgres-free.
- data/climate_store.py: psycopg + polars bridge over climate_history
(a hypertable), climate_recent, and climate_sync (per-cell freshness).
Reads via pl.read_database, writes via COPY + ON CONFLICT upsert;
fail-soft to a cache miss so a DB hiccup degrades to upstream refetch.
- data/climate.py: route every cache/mtime touchpoint through a backend
dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the
stale-serve path still avoids bumping it, so derived-payload tokens
invalidate on exactly the same events as before.
- alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema
(compression policy on year-old chunks), guarded to no-op off Postgres.
- migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the
parquet cache into the hypertables, preserving file mtimes as sync
timestamps so recent_stamp is unchanged across cutover.
- db image -> stock timescale/timescaledb:latest-pg18; drop the custom
pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb
tuning GUC. Docs updated for the new backend and cutover.
Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
|
|
|
## Compose `db` service
|
Containerize the app and move the databases to PostgreSQL 18 (#220)
Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the
data layer on Postgres, while keeping the test suite on SQLite.
- accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write +
read-only asyncpg pair (the RO engine pins read-only transactions, used by the
pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the
SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL
is unset). models.py: boolean server_default -> sa.false().
- store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg
when configured, else the existing raw-sqlite3 paths byte-for-byte; sync
interfaces and every fail-soft contract preserved.
- Alembic (backend/alembic/) manages the accounts schema; the container entrypoint
runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py
copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced),
skips access_token, and resets identity sequences.
- Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137)
and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet
climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet').
- deploy.sh/thermograph.service rewired to manage the compose stack; env example,
Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook.
Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was
verified via docker compose: alembic migrations, register/login, the RO endpoint,
store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
|
|
|
|
|
|
|
|
```yaml
|
|
|
|
|
db:
|
Move the climate record from parquet to TimescaleDB hypertables (#227)
Replace the per-cell parquet cache with TimescaleDB hypertables as the
production backend for the raw daily climate record, and drop pg_duckdb.
Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a
Postgres URL (dev, tests, offline tooling), the same dialect switch the
accounts DB and derived store already use, so CI stays Postgres-free.
- data/climate_store.py: psycopg + polars bridge over climate_history
(a hypertable), climate_recent, and climate_sync (per-cell freshness).
Reads via pl.read_database, writes via COPY + ON CONFLICT upsert;
fail-soft to a cache miss so a DB hiccup degrades to upstream refetch.
- data/climate.py: route every cache/mtime touchpoint through a backend
dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the
stale-serve path still avoids bumping it, so derived-payload tokens
invalidate on exactly the same events as before.
- alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema
(compression policy on year-old chunks), guarded to no-op off Postgres.
- migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the
parquet cache into the hypertables, preserving file mtimes as sync
timestamps so recent_stamp is unchanged across cutover.
- db image -> stock timescale/timescaledb:latest-pg18; drop the custom
pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb
tuning GUC. Docs updated for the new backend and cutover.
Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
|
|
|
image: timescale/timescaledb:latest-pg18
|
Containerize the app and move the databases to PostgreSQL 18 (#220)
Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the
data layer on Postgres, while keeping the test suite on SQLite.
- accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write +
read-only asyncpg pair (the RO engine pins read-only transactions, used by the
pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the
SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL
is unset). models.py: boolean server_default -> sa.false().
- store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg
when configured, else the existing raw-sqlite3 paths byte-for-byte; sync
interfaces and every fail-soft contract preserved.
- Alembic (backend/alembic/) manages the accounts schema; the container entrypoint
runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py
copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced),
skips access_token, and resets identity sequences.
- Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137)
and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet
climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet').
- deploy.sh/thermograph.service rewired to manage the compose stack; env example,
Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook.
Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was
verified via docker compose: alembic migrations, register/login, the RO endpoint,
store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
|
|
|
environment:
|
|
|
|
|
POSTGRES_USER: thermograph
|
|
|
|
|
POSTGRES_PASSWORD: ${POSTGRES_PASSWORD:?set POSTGRES_PASSWORD}
|
|
|
|
|
POSTGRES_DB: thermograph
|
Move the climate record from parquet to TimescaleDB hypertables (#227)
Replace the per-cell parquet cache with TimescaleDB hypertables as the
production backend for the raw daily climate record, and drop pg_duckdb.
Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a
Postgres URL (dev, tests, offline tooling), the same dialect switch the
accounts DB and derived store already use, so CI stays Postgres-free.
- data/climate_store.py: psycopg + polars bridge over climate_history
(a hypertable), climate_recent, and climate_sync (per-cell freshness).
Reads via pl.read_database, writes via COPY + ON CONFLICT upsert;
fail-soft to a cache miss so a DB hiccup degrades to upstream refetch.
- data/climate.py: route every cache/mtime touchpoint through a backend
dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the
stale-serve path still avoids bumping it, so derived-payload tokens
invalidate on exactly the same events as before.
- alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema
(compression policy on year-old chunks), guarded to no-op off Postgres.
- migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the
parquet cache into the hypertables, preserving file mtimes as sync
timestamps so recent_stamp is unchanged across cutover.
- db image -> stock timescale/timescaledb:latest-pg18; drop the custom
pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb
tuning GUC. Docs updated for the new backend and cutover.
Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
|
|
|
DB_MEMORY: ${DB_MEMORY:-8g}
|
Containerize the app and move the databases to PostgreSQL 18 (#220)
Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the
data layer on Postgres, while keeping the test suite on SQLite.
- accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write +
read-only asyncpg pair (the RO engine pins read-only transactions, used by the
pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the
SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL
is unset). models.py: boolean server_default -> sa.false().
- store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg
when configured, else the existing raw-sqlite3 paths byte-for-byte; sync
interfaces and every fail-soft contract preserved.
- Alembic (backend/alembic/) manages the accounts schema; the container entrypoint
runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py
copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced),
skips access_token, and resets identity sequences.
- Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137)
and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet
climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet').
- deploy.sh/thermograph.service rewired to manage the compose stack; env example,
Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook.
Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was
verified via docker compose: alembic migrations, register/login, the RO endpoint,
store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
|
|
|
volumes:
|
Move the climate record from parquet to TimescaleDB hypertables (#227)
Replace the per-cell parquet cache with TimescaleDB hypertables as the
production backend for the raw daily climate record, and drop pg_duckdb.
Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a
Postgres URL (dev, tests, offline tooling), the same dialect switch the
accounts DB and derived store already use, so CI stays Postgres-free.
- data/climate_store.py: psycopg + polars bridge over climate_history
(a hypertable), climate_recent, and climate_sync (per-cell freshness).
Reads via pl.read_database, writes via COPY + ON CONFLICT upsert;
fail-soft to a cache miss so a DB hiccup degrades to upstream refetch.
- data/climate.py: route every cache/mtime touchpoint through a backend
dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the
stale-serve path still avoids bumping it, so derived-payload tokens
invalidate on exactly the same events as before.
- alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema
(compression policy on year-old chunks), guarded to no-op off Postgres.
- migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the
parquet cache into the hypertables, preserving file mtimes as sync
timestamps so recent_stamp is unchanged across cutover.
- db image -> stock timescale/timescaledb:latest-pg18; drop the custom
pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb
tuning GUC. Docs updated for the new backend and cutover.
Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
|
|
|
- pgdata:/var/lib/postgresql
|
Containerize the app and move the databases to PostgreSQL 18 (#220)
Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the
data layer on Postgres, while keeping the test suite on SQLite.
- accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write +
read-only asyncpg pair (the RO engine pins read-only transactions, used by the
pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the
SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL
is unset). models.py: boolean server_default -> sa.false().
- store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg
when configured, else the existing raw-sqlite3 paths byte-for-byte; sync
interfaces and every fail-soft contract preserved.
- Alembic (backend/alembic/) manages the accounts schema; the container entrypoint
runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py
copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced),
skips access_token, and resets identity sequences.
- Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137)
and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet
climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet').
- deploy.sh/thermograph.service rewired to manage the compose stack; env example,
Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook.
Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was
verified via docker compose: alembic migrations, register/login, the RO endpoint,
store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
|
|
|
- ./deploy/db/init:/docker-entrypoint-initdb.d
|
Move the climate record from parquet to TimescaleDB hypertables (#227)
Replace the per-cell parquet cache with TimescaleDB hypertables as the
production backend for the raw daily climate record, and drop pg_duckdb.
Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a
Postgres URL (dev, tests, offline tooling), the same dialect switch the
accounts DB and derived store already use, so CI stays Postgres-free.
- data/climate_store.py: psycopg + polars bridge over climate_history
(a hypertable), climate_recent, and climate_sync (per-cell freshness).
Reads via pl.read_database, writes via COPY + ON CONFLICT upsert;
fail-soft to a cache miss so a DB hiccup degrades to upstream refetch.
- data/climate.py: route every cache/mtime touchpoint through a backend
dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the
stale-serve path still avoids bumping it, so derived-payload tokens
invalidate on exactly the same events as before.
- alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema
(compression policy on year-old chunks), guarded to no-op off Postgres.
- migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the
parquet cache into the hypertables, preserving file mtimes as sync
timestamps so recent_stamp is unchanged across cutover.
- db image -> stock timescale/timescaledb:latest-pg18; drop the custom
pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb
tuning GUC. Docs updated for the new backend and cutover.
Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
|
|
|
# healthcheck / cpus / mem_limit / shm_size: unchanged
|
Containerize the app and move the databases to PostgreSQL 18 (#220)
Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the
data layer on Postgres, while keeping the test suite on SQLite.
- accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write +
read-only asyncpg pair (the RO engine pins read-only transactions, used by the
pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the
SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL
is unset). models.py: boolean server_default -> sa.false().
- store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg
when configured, else the existing raw-sqlite3 paths byte-for-byte; sync
interfaces and every fail-soft contract preserved.
- Alembic (backend/alembic/) manages the accounts schema; the container entrypoint
runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py
copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced),
skips access_token, and resets identity sequences.
- Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137)
and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet
climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet').
- deploy.sh/thermograph.service rewired to manage the compose stack; env example,
Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook.
Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was
verified via docker compose: alembic migrations, register/login, the RO endpoint,
store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
|
|
|
```
|
|
|
|
|
|
|
|
|
|
Notes:
|
Move the climate record from parquet to TimescaleDB hypertables (#227)
Replace the per-cell parquet cache with TimescaleDB hypertables as the
production backend for the raw daily climate record, and drop pg_duckdb.
Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a
Postgres URL (dev, tests, offline tooling), the same dialect switch the
accounts DB and derived store already use, so CI stays Postgres-free.
- data/climate_store.py: psycopg + polars bridge over climate_history
(a hypertable), climate_recent, and climate_sync (per-cell freshness).
Reads via pl.read_database, writes via COPY + ON CONFLICT upsert;
fail-soft to a cache miss so a DB hiccup degrades to upstream refetch.
- data/climate.py: route every cache/mtime touchpoint through a backend
dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the
stale-serve path still avoids bumping it, so derived-payload tokens
invalidate on exactly the same events as before.
- alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema
(compression policy on year-old chunks), guarded to no-op off Postgres.
- migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the
parquet cache into the hypertables, preserving file mtimes as sync
timestamps so recent_stamp is unchanged across cutover.
- db image -> stock timescale/timescaledb:latest-pg18; drop the custom
pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb
tuning GUC. Docs updated for the new backend and cutover.
Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
|
|
|
- The volume is mounted at the **parent** of the data dir; the image picks its own
|
|
|
|
|
PGDATA subdir (`/var/lib/postgresql/data`) under it. The whole tree persists on
|
|
|
|
|
the named volume.
|
|
|
|
|
- No host port on purpose: the app reaches Postgres as `db:5432` on the compose
|
|
|
|
|
network. Nothing outside the stack should touch the database.
|
|
|
|
|
- Init scripts only run when PGDATA is empty. On an **existing** database, enable
|
|
|
|
|
the extension once by hand:
|
Containerize the app and move the databases to PostgreSQL 18 (#220)
Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the
data layer on Postgres, while keeping the test suite on SQLite.
- accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write +
read-only asyncpg pair (the RO engine pins read-only transactions, used by the
pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the
SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL
is unset). models.py: boolean server_default -> sa.false().
- store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg
when configured, else the existing raw-sqlite3 paths byte-for-byte; sync
interfaces and every fail-soft contract preserved.
- Alembic (backend/alembic/) manages the accounts schema; the container entrypoint
runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py
copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced),
skips access_token, and resets identity sequences.
- Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137)
and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet
climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet').
- deploy.sh/thermograph.service rewired to manage the compose stack; env example,
Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook.
Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was
verified via docker compose: alembic migrations, register/login, the RO endpoint,
store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
|
|
|
```
|
|
|
|
|
docker compose exec db psql -U thermograph -d thermograph \
|
Move the climate record from parquet to TimescaleDB hypertables (#227)
Replace the per-cell parquet cache with TimescaleDB hypertables as the
production backend for the raw daily climate record, and drop pg_duckdb.
Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a
Postgres URL (dev, tests, offline tooling), the same dialect switch the
accounts DB and derived store already use, so CI stays Postgres-free.
- data/climate_store.py: psycopg + polars bridge over climate_history
(a hypertable), climate_recent, and climate_sync (per-cell freshness).
Reads via pl.read_database, writes via COPY + ON CONFLICT upsert;
fail-soft to a cache miss so a DB hiccup degrades to upstream refetch.
- data/climate.py: route every cache/mtime touchpoint through a backend
dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the
stale-serve path still avoids bumping it, so derived-payload tokens
invalidate on exactly the same events as before.
- alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema
(compression policy on year-old chunks), guarded to no-op off Postgres.
- migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the
parquet cache into the hypertables, preserving file mtimes as sync
timestamps so recent_stamp is unchanged across cutover.
- db image -> stock timescale/timescaledb:latest-pg18; drop the custom
pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb
tuning GUC. Docs updated for the new backend and cutover.
Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
|
|
|
-c 'CREATE EXTENSION IF NOT EXISTS timescaledb;'
|
Containerize the app and move the databases to PostgreSQL 18 (#220)
Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the
data layer on Postgres, while keeping the test suite on SQLite.
- accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write +
read-only asyncpg pair (the RO engine pins read-only transactions, used by the
pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the
SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL
is unset). models.py: boolean server_default -> sa.false().
- store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg
when configured, else the existing raw-sqlite3 paths byte-for-byte; sync
interfaces and every fail-soft contract preserved.
- Alembic (backend/alembic/) manages the accounts schema; the container entrypoint
runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py
copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced),
skips access_token, and resets identity sequences.
- Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137)
and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet
climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet').
- deploy.sh/thermograph.service rewired to manage the compose stack; env example,
Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook.
Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was
verified via docker compose: alembic migrations, register/login, the RO endpoint,
store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
|
|
|
```
|
|
|
|
|
|
Move the climate record from parquet to TimescaleDB hypertables (#227)
Replace the per-cell parquet cache with TimescaleDB hypertables as the
production backend for the raw daily climate record, and drop pg_duckdb.
Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a
Postgres URL (dev, tests, offline tooling), the same dialect switch the
accounts DB and derived store already use, so CI stays Postgres-free.
- data/climate_store.py: psycopg + polars bridge over climate_history
(a hypertable), climate_recent, and climate_sync (per-cell freshness).
Reads via pl.read_database, writes via COPY + ON CONFLICT upsert;
fail-soft to a cache miss so a DB hiccup degrades to upstream refetch.
- data/climate.py: route every cache/mtime touchpoint through a backend
dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the
stale-serve path still avoids bumping it, so derived-payload tokens
invalidate on exactly the same events as before.
- alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema
(compression policy on year-old chunks), guarded to no-op off Postgres.
- migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the
parquet cache into the hypertables, preserving file mtimes as sync
timestamps so recent_stamp is unchanged across cutover.
- db image -> stock timescale/timescaledb:latest-pg18; drop the custom
pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb
tuning GUC. Docs updated for the new backend and cutover.
Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
|
|
|
## Inspecting the hypertable
|
Containerize the app and move the databases to PostgreSQL 18 (#220)
Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the
data layer on Postgres, while keeping the test suite on SQLite.
- accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write +
read-only asyncpg pair (the RO engine pins read-only transactions, used by the
pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the
SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL
is unset). models.py: boolean server_default -> sa.false().
- store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg
when configured, else the existing raw-sqlite3 paths byte-for-byte; sync
interfaces and every fail-soft contract preserved.
- Alembic (backend/alembic/) manages the accounts schema; the container entrypoint
runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py
copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced),
skips access_token, and resets identity sequences.
- Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137)
and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet
climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet').
- deploy.sh/thermograph.service rewired to manage the compose stack; env example,
Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook.
Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was
verified via docker compose: alembic migrations, register/login, the RO endpoint,
store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
|
|
|
|
|
|
|
|
```sql
|
Move the climate record from parquet to TimescaleDB hypertables (#227)
Replace the per-cell parquet cache with TimescaleDB hypertables as the
production backend for the raw daily climate record, and drop pg_duckdb.
Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a
Postgres URL (dev, tests, offline tooling), the same dialect switch the
accounts DB and derived store already use, so CI stays Postgres-free.
- data/climate_store.py: psycopg + polars bridge over climate_history
(a hypertable), climate_recent, and climate_sync (per-cell freshness).
Reads via pl.read_database, writes via COPY + ON CONFLICT upsert;
fail-soft to a cache miss so a DB hiccup degrades to upstream refetch.
- data/climate.py: route every cache/mtime touchpoint through a backend
dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the
stale-serve path still avoids bumping it, so derived-payload tokens
invalidate on exactly the same events as before.
- alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema
(compression policy on year-old chunks), guarded to no-op off Postgres.
- migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the
parquet cache into the hypertables, preserving file mtimes as sync
timestamps so recent_stamp is unchanged across cutover.
- db image -> stock timescale/timescaledb:latest-pg18; drop the custom
pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb
tuning GUC. Docs updated for the new backend and cutover.
Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
|
|
|
-- Chunk / compression overview
|
|
|
|
|
SELECT hypertable_name, num_chunks, compression_enabled
|
|
|
|
|
FROM timescaledb_information.hypertables;
|
|
|
|
|
|
|
|
|
|
-- One cell, most recent archived days
|
|
|
|
|
SELECT date, tmax, tmin, precip
|
|
|
|
|
FROM climate_history WHERE cell_id = '1026_-2857'
|
|
|
|
|
ORDER BY date DESC LIMIT 5;
|
|
|
|
|
|
|
|
|
|
-- Per-year highs for one cell
|
|
|
|
|
SELECT EXTRACT(YEAR FROM date) AS yr,
|
|
|
|
|
ROUND(AVG(tmax)::numeric, 1) AS avg_tmax, MAX(tmax) AS record_high
|
|
|
|
|
FROM climate_history WHERE cell_id = '1026_-2857' AND date >= '2020-01-01'
|
Containerize the app and move the databases to PostgreSQL 18 (#220)
Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the
data layer on Postgres, while keeping the test suite on SQLite.
- accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write +
read-only asyncpg pair (the RO engine pins read-only transactions, used by the
pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the
SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL
is unset). models.py: boolean server_default -> sa.false().
- store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg
when configured, else the existing raw-sqlite3 paths byte-for-byte; sync
interfaces and every fail-soft contract preserved.
- Alembic (backend/alembic/) manages the accounts schema; the container entrypoint
runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py
copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced),
skips access_token, and resets identity sequences.
- Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137)
and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet
climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet').
- deploy.sh/thermograph.service rewired to manage the compose stack; env example,
Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook.
Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was
verified via docker compose: alembic migrations, register/login, the RO endpoint,
store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
|
|
|
GROUP BY yr ORDER BY yr;
|
|
|
|
|
```
|