thermograph/deploy/db/README.md

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Move the climate record from parquet to TimescaleDB hypertables (#227) Replace the per-cell parquet cache with TimescaleDB hypertables as the production backend for the raw daily climate record, and drop pg_duckdb. Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a Postgres URL (dev, tests, offline tooling), the same dialect switch the accounts DB and derived store already use, so CI stays Postgres-free. - data/climate_store.py: psycopg + polars bridge over climate_history (a hypertable), climate_recent, and climate_sync (per-cell freshness). Reads via pl.read_database, writes via COPY + ON CONFLICT upsert; fail-soft to a cache miss so a DB hiccup degrades to upstream refetch. - data/climate.py: route every cache/mtime touchpoint through a backend dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the stale-serve path still avoids bumping it, so derived-payload tokens invalidate on exactly the same events as before. - alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema (compression policy on year-old chunks), guarded to no-op off Postgres. - migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the parquet cache into the hypertables, preserving file mtimes as sync timestamps so recent_stamp is unchanged across cutover. - db image -> stock timescale/timescaledb:latest-pg18; drop the custom pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb tuning GUC. Docs updated for the new backend and cutover. Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
# Thermograph DB — TimescaleDB (PostgreSQL 18)
The `db` service runs the stock **`timescale/timescaledb:latest-pg18`** image
(TimescaleDB 2.24+, genuine PostgreSQL 18). The app's climate record lives here in
**hypertables** — the DB, not the filesystem, is the source of truth:
- **`climate_history`** — a hypertable of the full daily archive per grid cell
(`cell_id, date, tmax, tmin, precip, wind, gust, humid, fmax, fmin, feels`), back
to 1980. Durable/LOGGED (a 45-year, rate-limited refetch is expensive),
range-partitioned on `date` (5-year chunks), compressed for chunks older than a
year.
- **`climate_recent`** — the recent-observations + forward-forecast bundle (a plain
table: it holds future dates and is rewritten hourly).
- **`climate_sync`** — per-cell freshness (epoch seconds) that replaces the old
parquet file mtimes: it drives the hourly history top-up, the 1-hour forecast
TTL, and the `recent_stamp` token embedded in derived-payload validity.
The schema is created by Alembic (`backend/alembic/versions/0002_climate_hypertables.py`,
run at app boot via `deploy/entrypoint.sh`). The app reads/writes it through
`backend/data/climate_store.py` (psycopg + polars). See
`deploy/POSTGRES-MIGRATION.md` for the parquet→hypertable cutover.
## Why the stock image (no custom Dockerfile)
The previous DB image was a custom `pgduckdb/pgduckdb:18` build whose only purpose
was ad-hoc `read_parquet()` over the parquet cache. Now the climate record is in
real tables, so that capability is gone and the DB is the **stock TimescaleDB
image** — no build step. The image already sets
`shared_preload_libraries=timescaledb`; never `ALTER SYSTEM SET
shared_preload_libraries` (it would land in `postgresql.auto.conf` and override the
image's preload).
Containerize the app and move the databases to PostgreSQL 18 (#220) Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the data layer on Postgres, while keeping the test suite on SQLite. - accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write + read-only asyncpg pair (the RO engine pins read-only transactions, used by the pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL is unset). models.py: boolean server_default -> sa.false(). - store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg when configured, else the existing raw-sqlite3 paths byte-for-byte; sync interfaces and every fail-soft contract preserved. - Alembic (backend/alembic/) manages the accounts schema; the container entrypoint runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced), skips access_token, and resets identity sequences. - Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137) and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet'). - deploy.sh/thermograph.service rewired to manage the compose stack; env example, Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook. Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was verified via docker compose: alembic migrations, register/login, the RO endpoint, store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
## Files here
Move the climate record from parquet to TimescaleDB hypertables (#227) Replace the per-cell parquet cache with TimescaleDB hypertables as the production backend for the raw daily climate record, and drop pg_duckdb. Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a Postgres URL (dev, tests, offline tooling), the same dialect switch the accounts DB and derived store already use, so CI stays Postgres-free. - data/climate_store.py: psycopg + polars bridge over climate_history (a hypertable), climate_recent, and climate_sync (per-cell freshness). Reads via pl.read_database, writes via COPY + ON CONFLICT upsert; fail-soft to a cache miss so a DB hiccup degrades to upstream refetch. - data/climate.py: route every cache/mtime touchpoint through a backend dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the stale-serve path still avoids bumping it, so derived-payload tokens invalidate on exactly the same events as before. - alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema (compression policy on year-old chunks), guarded to no-op off Postgres. - migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the parquet cache into the hypertables, preserving file mtimes as sync timestamps so recent_stamp is unchanged across cutover. - db image -> stock timescale/timescaledb:latest-pg18; drop the custom pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb tuning GUC. Docs updated for the new backend and cutover. Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
- **`init/10-timescaledb.sql`** — `CREATE EXTENSION IF NOT EXISTS timescaledb;`
(runs from `/docker-entrypoint-initdb.d` on first cluster init; Alembic also does
this idempotently at boot).
- **`init/20-tuning.sh`** — scales `shared_buffers` (25%), `effective_cache_size`
(75%), `work_mem`, and `maintenance_work_mem` from `DB_MEMORY` via `ALTER SYSTEM`.
Containerize the app and move the databases to PostgreSQL 18 (#220) Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the data layer on Postgres, while keeping the test suite on SQLite. - accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write + read-only asyncpg pair (the RO engine pins read-only transactions, used by the pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL is unset). models.py: boolean server_default -> sa.false(). - store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg when configured, else the existing raw-sqlite3 paths byte-for-byte; sync interfaces and every fail-soft contract preserved. - Alembic (backend/alembic/) manages the accounts schema; the container entrypoint runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced), skips access_token, and resets identity sequences. - Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137) and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet'). - deploy.sh/thermograph.service rewired to manage the compose stack; env example, Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook. Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was verified via docker compose: alembic migrations, register/login, the RO endpoint, store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
Move the climate record from parquet to TimescaleDB hypertables (#227) Replace the per-cell parquet cache with TimescaleDB hypertables as the production backend for the raw daily climate record, and drop pg_duckdb. Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a Postgres URL (dev, tests, offline tooling), the same dialect switch the accounts DB and derived store already use, so CI stays Postgres-free. - data/climate_store.py: psycopg + polars bridge over climate_history (a hypertable), climate_recent, and climate_sync (per-cell freshness). Reads via pl.read_database, writes via COPY + ON CONFLICT upsert; fail-soft to a cache miss so a DB hiccup degrades to upstream refetch. - data/climate.py: route every cache/mtime touchpoint through a backend dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the stale-serve path still avoids bumping it, so derived-payload tokens invalidate on exactly the same events as before. - alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema (compression policy on year-old chunks), guarded to no-op off Postgres. - migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the parquet cache into the hypertables, preserving file mtimes as sync timestamps so recent_stamp is unchanged across cutover. - db image -> stock timescale/timescaledb:latest-pg18; drop the custom pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb tuning GUC. Docs updated for the new backend and cutover. Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
## Compose `db` service
Containerize the app and move the databases to PostgreSQL 18 (#220) Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the data layer on Postgres, while keeping the test suite on SQLite. - accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write + read-only asyncpg pair (the RO engine pins read-only transactions, used by the pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL is unset). models.py: boolean server_default -> sa.false(). - store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg when configured, else the existing raw-sqlite3 paths byte-for-byte; sync interfaces and every fail-soft contract preserved. - Alembic (backend/alembic/) manages the accounts schema; the container entrypoint runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced), skips access_token, and resets identity sequences. - Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137) and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet'). - deploy.sh/thermograph.service rewired to manage the compose stack; env example, Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook. Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was verified via docker compose: alembic migrations, register/login, the RO endpoint, store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
```yaml
db:
Move the climate record from parquet to TimescaleDB hypertables (#227) Replace the per-cell parquet cache with TimescaleDB hypertables as the production backend for the raw daily climate record, and drop pg_duckdb. Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a Postgres URL (dev, tests, offline tooling), the same dialect switch the accounts DB and derived store already use, so CI stays Postgres-free. - data/climate_store.py: psycopg + polars bridge over climate_history (a hypertable), climate_recent, and climate_sync (per-cell freshness). Reads via pl.read_database, writes via COPY + ON CONFLICT upsert; fail-soft to a cache miss so a DB hiccup degrades to upstream refetch. - data/climate.py: route every cache/mtime touchpoint through a backend dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the stale-serve path still avoids bumping it, so derived-payload tokens invalidate on exactly the same events as before. - alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema (compression policy on year-old chunks), guarded to no-op off Postgres. - migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the parquet cache into the hypertables, preserving file mtimes as sync timestamps so recent_stamp is unchanged across cutover. - db image -> stock timescale/timescaledb:latest-pg18; drop the custom pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb tuning GUC. Docs updated for the new backend and cutover. Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
image: timescale/timescaledb:latest-pg18
Containerize the app and move the databases to PostgreSQL 18 (#220) Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the data layer on Postgres, while keeping the test suite on SQLite. - accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write + read-only asyncpg pair (the RO engine pins read-only transactions, used by the pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL is unset). models.py: boolean server_default -> sa.false(). - store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg when configured, else the existing raw-sqlite3 paths byte-for-byte; sync interfaces and every fail-soft contract preserved. - Alembic (backend/alembic/) manages the accounts schema; the container entrypoint runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced), skips access_token, and resets identity sequences. - Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137) and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet'). - deploy.sh/thermograph.service rewired to manage the compose stack; env example, Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook. Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was verified via docker compose: alembic migrations, register/login, the RO endpoint, store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
environment:
POSTGRES_USER: thermograph
POSTGRES_PASSWORD: ${POSTGRES_PASSWORD:?set POSTGRES_PASSWORD}
POSTGRES_DB: thermograph
Move the climate record from parquet to TimescaleDB hypertables (#227) Replace the per-cell parquet cache with TimescaleDB hypertables as the production backend for the raw daily climate record, and drop pg_duckdb. Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a Postgres URL (dev, tests, offline tooling), the same dialect switch the accounts DB and derived store already use, so CI stays Postgres-free. - data/climate_store.py: psycopg + polars bridge over climate_history (a hypertable), climate_recent, and climate_sync (per-cell freshness). Reads via pl.read_database, writes via COPY + ON CONFLICT upsert; fail-soft to a cache miss so a DB hiccup degrades to upstream refetch. - data/climate.py: route every cache/mtime touchpoint through a backend dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the stale-serve path still avoids bumping it, so derived-payload tokens invalidate on exactly the same events as before. - alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema (compression policy on year-old chunks), guarded to no-op off Postgres. - migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the parquet cache into the hypertables, preserving file mtimes as sync timestamps so recent_stamp is unchanged across cutover. - db image -> stock timescale/timescaledb:latest-pg18; drop the custom pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb tuning GUC. Docs updated for the new backend and cutover. Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
DB_MEMORY: ${DB_MEMORY:-8g}
Containerize the app and move the databases to PostgreSQL 18 (#220) Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the data layer on Postgres, while keeping the test suite on SQLite. - accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write + read-only asyncpg pair (the RO engine pins read-only transactions, used by the pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL is unset). models.py: boolean server_default -> sa.false(). - store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg when configured, else the existing raw-sqlite3 paths byte-for-byte; sync interfaces and every fail-soft contract preserved. - Alembic (backend/alembic/) manages the accounts schema; the container entrypoint runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced), skips access_token, and resets identity sequences. - Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137) and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet'). - deploy.sh/thermograph.service rewired to manage the compose stack; env example, Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook. Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was verified via docker compose: alembic migrations, register/login, the RO endpoint, store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
volumes:
Move the climate record from parquet to TimescaleDB hypertables (#227) Replace the per-cell parquet cache with TimescaleDB hypertables as the production backend for the raw daily climate record, and drop pg_duckdb. Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a Postgres URL (dev, tests, offline tooling), the same dialect switch the accounts DB and derived store already use, so CI stays Postgres-free. - data/climate_store.py: psycopg + polars bridge over climate_history (a hypertable), climate_recent, and climate_sync (per-cell freshness). Reads via pl.read_database, writes via COPY + ON CONFLICT upsert; fail-soft to a cache miss so a DB hiccup degrades to upstream refetch. - data/climate.py: route every cache/mtime touchpoint through a backend dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the stale-serve path still avoids bumping it, so derived-payload tokens invalidate on exactly the same events as before. - alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema (compression policy on year-old chunks), guarded to no-op off Postgres. - migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the parquet cache into the hypertables, preserving file mtimes as sync timestamps so recent_stamp is unchanged across cutover. - db image -> stock timescale/timescaledb:latest-pg18; drop the custom pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb tuning GUC. Docs updated for the new backend and cutover. Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
- pgdata:/var/lib/postgresql
Containerize the app and move the databases to PostgreSQL 18 (#220) Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the data layer on Postgres, while keeping the test suite on SQLite. - accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write + read-only asyncpg pair (the RO engine pins read-only transactions, used by the pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL is unset). models.py: boolean server_default -> sa.false(). - store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg when configured, else the existing raw-sqlite3 paths byte-for-byte; sync interfaces and every fail-soft contract preserved. - Alembic (backend/alembic/) manages the accounts schema; the container entrypoint runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced), skips access_token, and resets identity sequences. - Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137) and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet'). - deploy.sh/thermograph.service rewired to manage the compose stack; env example, Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook. Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was verified via docker compose: alembic migrations, register/login, the RO endpoint, store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
- ./deploy/db/init:/docker-entrypoint-initdb.d
Move the climate record from parquet to TimescaleDB hypertables (#227) Replace the per-cell parquet cache with TimescaleDB hypertables as the production backend for the raw daily climate record, and drop pg_duckdb. Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a Postgres URL (dev, tests, offline tooling), the same dialect switch the accounts DB and derived store already use, so CI stays Postgres-free. - data/climate_store.py: psycopg + polars bridge over climate_history (a hypertable), climate_recent, and climate_sync (per-cell freshness). Reads via pl.read_database, writes via COPY + ON CONFLICT upsert; fail-soft to a cache miss so a DB hiccup degrades to upstream refetch. - data/climate.py: route every cache/mtime touchpoint through a backend dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the stale-serve path still avoids bumping it, so derived-payload tokens invalidate on exactly the same events as before. - alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema (compression policy on year-old chunks), guarded to no-op off Postgres. - migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the parquet cache into the hypertables, preserving file mtimes as sync timestamps so recent_stamp is unchanged across cutover. - db image -> stock timescale/timescaledb:latest-pg18; drop the custom pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb tuning GUC. Docs updated for the new backend and cutover. Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
# healthcheck / cpus / mem_limit / shm_size: unchanged
Containerize the app and move the databases to PostgreSQL 18 (#220) Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the data layer on Postgres, while keeping the test suite on SQLite. - accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write + read-only asyncpg pair (the RO engine pins read-only transactions, used by the pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL is unset). models.py: boolean server_default -> sa.false(). - store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg when configured, else the existing raw-sqlite3 paths byte-for-byte; sync interfaces and every fail-soft contract preserved. - Alembic (backend/alembic/) manages the accounts schema; the container entrypoint runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced), skips access_token, and resets identity sequences. - Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137) and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet'). - deploy.sh/thermograph.service rewired to manage the compose stack; env example, Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook. Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was verified via docker compose: alembic migrations, register/login, the RO endpoint, store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
```
Notes:
Move the climate record from parquet to TimescaleDB hypertables (#227) Replace the per-cell parquet cache with TimescaleDB hypertables as the production backend for the raw daily climate record, and drop pg_duckdb. Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a Postgres URL (dev, tests, offline tooling), the same dialect switch the accounts DB and derived store already use, so CI stays Postgres-free. - data/climate_store.py: psycopg + polars bridge over climate_history (a hypertable), climate_recent, and climate_sync (per-cell freshness). Reads via pl.read_database, writes via COPY + ON CONFLICT upsert; fail-soft to a cache miss so a DB hiccup degrades to upstream refetch. - data/climate.py: route every cache/mtime touchpoint through a backend dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the stale-serve path still avoids bumping it, so derived-payload tokens invalidate on exactly the same events as before. - alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema (compression policy on year-old chunks), guarded to no-op off Postgres. - migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the parquet cache into the hypertables, preserving file mtimes as sync timestamps so recent_stamp is unchanged across cutover. - db image -> stock timescale/timescaledb:latest-pg18; drop the custom pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb tuning GUC. Docs updated for the new backend and cutover. Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
- The volume is mounted at the **parent** of the data dir; the image picks its own
PGDATA subdir (`/var/lib/postgresql/data`) under it. The whole tree persists on
the named volume.
- No host port on purpose: the app reaches Postgres as `db:5432` on the compose
network. Nothing outside the stack should touch the database.
- Init scripts only run when PGDATA is empty. On an **existing** database, enable
the extension once by hand:
Containerize the app and move the databases to PostgreSQL 18 (#220) Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the data layer on Postgres, while keeping the test suite on SQLite. - accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write + read-only asyncpg pair (the RO engine pins read-only transactions, used by the pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL is unset). models.py: boolean server_default -> sa.false(). - store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg when configured, else the existing raw-sqlite3 paths byte-for-byte; sync interfaces and every fail-soft contract preserved. - Alembic (backend/alembic/) manages the accounts schema; the container entrypoint runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced), skips access_token, and resets identity sequences. - Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137) and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet'). - deploy.sh/thermograph.service rewired to manage the compose stack; env example, Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook. Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was verified via docker compose: alembic migrations, register/login, the RO endpoint, store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
```
docker compose exec db psql -U thermograph -d thermograph \
Move the climate record from parquet to TimescaleDB hypertables (#227) Replace the per-cell parquet cache with TimescaleDB hypertables as the production backend for the raw daily climate record, and drop pg_duckdb. Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a Postgres URL (dev, tests, offline tooling), the same dialect switch the accounts DB and derived store already use, so CI stays Postgres-free. - data/climate_store.py: psycopg + polars bridge over climate_history (a hypertable), climate_recent, and climate_sync (per-cell freshness). Reads via pl.read_database, writes via COPY + ON CONFLICT upsert; fail-soft to a cache miss so a DB hiccup degrades to upstream refetch. - data/climate.py: route every cache/mtime touchpoint through a backend dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the stale-serve path still avoids bumping it, so derived-payload tokens invalidate on exactly the same events as before. - alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema (compression policy on year-old chunks), guarded to no-op off Postgres. - migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the parquet cache into the hypertables, preserving file mtimes as sync timestamps so recent_stamp is unchanged across cutover. - db image -> stock timescale/timescaledb:latest-pg18; drop the custom pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb tuning GUC. Docs updated for the new backend and cutover. Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
-c 'CREATE EXTENSION IF NOT EXISTS timescaledb;'
Containerize the app and move the databases to PostgreSQL 18 (#220) Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the data layer on Postgres, while keeping the test suite on SQLite. - accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write + read-only asyncpg pair (the RO engine pins read-only transactions, used by the pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL is unset). models.py: boolean server_default -> sa.false(). - store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg when configured, else the existing raw-sqlite3 paths byte-for-byte; sync interfaces and every fail-soft contract preserved. - Alembic (backend/alembic/) manages the accounts schema; the container entrypoint runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced), skips access_token, and resets identity sequences. - Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137) and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet'). - deploy.sh/thermograph.service rewired to manage the compose stack; env example, Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook. Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was verified via docker compose: alembic migrations, register/login, the RO endpoint, store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
```
Move the climate record from parquet to TimescaleDB hypertables (#227) Replace the per-cell parquet cache with TimescaleDB hypertables as the production backend for the raw daily climate record, and drop pg_duckdb. Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a Postgres URL (dev, tests, offline tooling), the same dialect switch the accounts DB and derived store already use, so CI stays Postgres-free. - data/climate_store.py: psycopg + polars bridge over climate_history (a hypertable), climate_recent, and climate_sync (per-cell freshness). Reads via pl.read_database, writes via COPY + ON CONFLICT upsert; fail-soft to a cache miss so a DB hiccup degrades to upstream refetch. - data/climate.py: route every cache/mtime touchpoint through a backend dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the stale-serve path still avoids bumping it, so derived-payload tokens invalidate on exactly the same events as before. - alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema (compression policy on year-old chunks), guarded to no-op off Postgres. - migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the parquet cache into the hypertables, preserving file mtimes as sync timestamps so recent_stamp is unchanged across cutover. - db image -> stock timescale/timescaledb:latest-pg18; drop the custom pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb tuning GUC. Docs updated for the new backend and cutover. Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
## Inspecting the hypertable
Containerize the app and move the databases to PostgreSQL 18 (#220) Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the data layer on Postgres, while keeping the test suite on SQLite. - accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write + read-only asyncpg pair (the RO engine pins read-only transactions, used by the pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL is unset). models.py: boolean server_default -> sa.false(). - store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg when configured, else the existing raw-sqlite3 paths byte-for-byte; sync interfaces and every fail-soft contract preserved. - Alembic (backend/alembic/) manages the accounts schema; the container entrypoint runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced), skips access_token, and resets identity sequences. - Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137) and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet'). - deploy.sh/thermograph.service rewired to manage the compose stack; env example, Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook. Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was verified via docker compose: alembic migrations, register/login, the RO endpoint, store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
```sql
Move the climate record from parquet to TimescaleDB hypertables (#227) Replace the per-cell parquet cache with TimescaleDB hypertables as the production backend for the raw daily climate record, and drop pg_duckdb. Parquet stays the backend whenever THERMOGRAPH_DATABASE_URL is not a Postgres URL (dev, tests, offline tooling), the same dialect switch the accounts DB and derived store already use, so CI stays Postgres-free. - data/climate_store.py: psycopg + polars bridge over climate_history (a hypertable), climate_recent, and climate_sync (per-cell freshness). Reads via pl.read_database, writes via COPY + ON CONFLICT upsert; fail-soft to a cache miss so a DB hiccup degrades to upstream refetch. - data/climate.py: route every cache/mtime touchpoint through a backend dispatch. recent_stamp becomes int(recent_synced_at) on Postgres; the stale-serve path still avoids bumping it, so derived-payload tokens invalidate on exactly the same events as before. - alembic 0002: CREATE EXTENSION timescaledb plus the hypertable schema (compression policy on year-old chunks), guarded to no-op off Postgres. - migrate_cache_to_pg.py (make migrate-cache): idempotent backfill of the parquet cache into the hypertables, preserving file mtimes as sync timestamps so recent_stamp is unchanged across cutover. - db image -> stock timescale/timescaledb:latest-pg18; drop the custom pg_duckdb Dockerfile, the read-only /parquet mount, and the duckdb tuning GUC. Docs updated for the new backend and cutover. Co-authored-by: Claude <noreply@anthropic.com>
2026-07-20 20:15:55 +00:00
-- Chunk / compression overview
SELECT hypertable_name, num_chunks, compression_enabled
FROM timescaledb_information.hypertables;
-- One cell, most recent archived days
SELECT date, tmax, tmin, precip
FROM climate_history WHERE cell_id = '1026_-2857'
ORDER BY date DESC LIMIT 5;
-- Per-year highs for one cell
SELECT EXTRACT(YEAR FROM date) AS yr,
ROUND(AVG(tmax)::numeric, 1) AS avg_tmax, MAX(tmax) AS record_high
FROM climate_history WHERE cell_id = '1026_-2857' AND date >= '2020-01-01'
Containerize the app and move the databases to PostgreSQL 18 (#220) Run Thermograph as a docker-compose stack (app + Postgres 18) and standardize the data layer on Postgres, while keeping the test suite on SQLite. - accounts/db.py: DSN-driven engines. On Postgres, a per-worker read-write + read-only asyncpg pair (the RO engine pins read-only transactions, used by the pure-GET endpoints) plus a sync psycopg engine for the notifier thread; the SQLite path is preserved for tests/local (selected when THERMOGRAPH_DATABASE_URL is unset). models.py: boolean server_default -> sa.false(). - store.py / metrics.py: dialect-flexible — Postgres UNLOGGED tables via psycopg when configured, else the existing raw-sqlite3 paths byte-for-byte; sync interfaces and every fail-soft contract preserved. - Alembic (backend/alembic/) manages the accounts schema; the container entrypoint runs `alembic upgrade head` before uvicorn (4 workers). migrate_accounts_to_pg.py copies the accounts data SQLite->PG through the ORM (UUID/bool/JSON coerced), skips access_token, and resets identity sequences. - Dockerfile + docker-compose.yml: app image (uvicorn, 4 workers, loopback 8137) and a Postgres 18 db (2 CPUs) running pg_duckdb (deploy/db/) so the parquet climate cache is queryable in-DB via read_parquet('/parquet/cache/*.parquet'). - deploy.sh/thermograph.service rewired to manage the compose stack; env example, Makefile targets (up/down/db-up), and deploy/POSTGRES-MIGRATION.md cutover runbook. Tests stay on SQLite (dialect fallback) — 323 pass. The full Postgres stack was verified via docker compose: alembic migrations, register/login, the RO endpoint, store/metrics round-trips, and the accounts data migration.
2026-07-20 06:28:23 +00:00
GROUP BY yr ORDER BY yr;
```