thermograph/backend/lake_app.py
Emi Griffith 38b11635a6
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Lake /query reads era5_daily through Iceberg metadata
The hive-glob view must LIST every object under era5/daily/ at view bind —
~1k objects per tile, which crossed the request timeout once the lake hit
390 tiles (seen live: prod /query timing out). Bucket mode now resolves the
newest Iceberg metadata JSON (one single-page LIST) and iceberg_scans it, so
the file list comes from table metadata; local mode (tests, small trees)
keeps the plain glob. The iceberg extension is baked next to httpfs, as the
runtime user.
2026-07-24 12:07:55 -07:00

204 lines
8.5 KiB
Python

"""The lake service: low-latency SQL-ish reads over the ERA5 bucket (prod-only).
A small FastAPI app run as the Swarm ``lake`` service (same backend image,
``THERMOGRAPH_ROLE=lake`` — the entrypoint launches this module instead of the
web app; no database, no migrations). Web replicas call it instead of touching
the bucket themselves, so a cell's history costs one LAN round-trip against a
warm disk cache instead of an S3 fetch, and analytical queries get
partition-pruned scans without shipping S3 credentials to every web task.
Endpoints:
- ``GET /healthz`` liveness (also reports manifest row count)
- ``GET /history?lat=&lon=`` the hot path: nearest ERA5 point's full daily
history as parquet bytes, disk-cached per point
(a plain single-file read — no engine needed)
- ``POST /query {"sql": ..}`` SELECT-only SQL over two views: ``era5_daily``
(the hive table, partition-pruned on
tile/year/month predicates) and ``manifest``.
Runs on DuckDB — a real lake engine (full SQL,
parallel scans, hive + row-group pushdown); the
httpfs extension is baked into the image so S3
needs no runtime extension fetch.
Scale-out safe: replicas share nothing — each keeps its own cache under
THERMOGRAPH_LAKE_CACHE (a per-task local volume), so 1..2 replicas behind the
Swarm VIP need no coordination.
"""
import io
import os
import re
import threading
import time
import polars as pl
from fastapi import FastAPI, HTTPException
from fastapi.responses import FileResponse, Response
from pydantic import BaseModel
from data import era5lake
CACHE_DIR = os.environ.get("THERMOGRAPH_LAKE_CACHE", "/state/lake-cache")
MANIFEST_TTL = 6 * 3600 # re-pull the manifest at most this often
QUERY_ROW_CAP = 10_000 # /query responses are JSON; keep them bounded
app = FastAPI(title="thermograph-lake")
_manifest_lock = threading.Lock()
_manifest: "pl.DataFrame | None" = None
_manifest_at = 0.0
def _source():
"""(mode, cfg) for this process: a local lake dir (tests/dev) or the bucket."""
if era5lake.local_dir():
return "local", None
cfg = era5lake.s3_config()
return ("bucket", cfg) if cfg else ("none", None)
def _manifest_frame() -> "pl.DataFrame | None":
global _manifest, _manifest_at
with _manifest_lock:
if _manifest is not None and time.time() - _manifest_at < MANIFEST_TTL:
return _manifest
mode, cfg = _source()
try:
if mode == "local":
df = pl.read_parquet(
os.path.join(era5lake.local_dir(), era5lake.MANIFEST_KEY))
elif mode == "bucket":
df = pl.read_parquet(
f"s3://{cfg['bucket']}/{era5lake.MANIFEST_KEY}",
storage_options=era5lake.storage_options(cfg))
else:
return None
except Exception: # noqa: BLE001 - empty/unreachable lake: serve health, 404 reads
return None
_manifest, _manifest_at = df, time.time()
return df
@app.get("/healthz")
def healthz():
mode, _ = _source()
m = _manifest_frame()
return {"status": "ok", "source": mode,
"points": None if m is None else m.height}
@app.get("/history")
def history(lat: float, lon: float):
"""One ERA5 point's full daily history, as parquet bytes (cached on disk —
the cache file IS the response body, so a warm hit is a sendfile)."""
i, j = era5lake.to_idx(lat, lon)
path = os.path.join(CACHE_DIR, f"p{i}_{j}.parquet")
if not os.path.exists(path):
mode, cfg = _source()
if mode == "none":
raise HTTPException(status_code=503, detail="lake not configured")
m = _manifest_frame()
if m is not None and m.filter(
(pl.col("lat_idx") == i) & (pl.col("lon_idx") == j)).is_empty():
raise HTTPException(status_code=404, detail="point not in the lake")
try:
if mode == "local":
df = era5lake._read_local(i, j)
else:
df = era5lake._read_bucket(i, j, cfg)
except era5lake.LakeUnavailable as e:
raise HTTPException(status_code=404, detail=str(e)) from e
try:
os.makedirs(CACHE_DIR, exist_ok=True)
tmp = f"{path}.{os.getpid()}.partial"
df.write_parquet(tmp)
os.replace(tmp, path) # atomic: concurrent readers see whole files only
except OSError:
# An unwritable cache (bad volume ownership, full disk) must never
# fail the hot path — serve from memory; the cache is an
# accelerator, not a dependency.
buf = io.BytesIO()
df.write_parquet(buf)
return Response(buf.getvalue(),
media_type="application/vnd.apache.parquet",
headers={"X-Lake-Point": f"{i},{j}"})
return FileResponse(path, media_type="application/vnd.apache.parquet",
headers={"X-Lake-Point": f"{i},{j}"})
class Query(BaseModel):
sql: str
_FORBIDDEN = re.compile(
r"\b(insert|update|delete|drop|create|alter|attach|copy|truncate|install|load"
r"|export|import|pragma|set|call)\b", re.I)
def _connect():
"""A fresh in-memory DuckDB with the lake views registered. Returns None
when no lake is configured.
Bucket mode reads era5_daily through the ICEBERG table, not a hive glob:
a glob over era5/daily/ must LIST every object under it (~1k per tile —
minutes at a few hundred tiles, seen live timing out /query at 390),
while Iceberg gets the file list from table metadata in a handful of
reads. Local mode (tests, small trees) keeps the plain hive glob — no
Iceberg table exists in the fixtures and listing a local dir is free."""
import duckdb # noqa: PLC0415 - only the lake role pays the import
mode, cfg = _source()
if mode == "none":
return None
con = duckdb.connect()
if mode == "local":
daily_glob = os.path.join(era5lake.local_dir(), era5lake.PREFIX,
"daily/*/*/*/*.parquet")
con.execute(f"""
CREATE VIEW era5_daily AS
SELECT * FROM read_parquet('{daily_glob}', hive_partitioning=1)""")
manifest_src = os.path.join(era5lake.local_dir(), era5lake.MANIFEST_KEY)
con.execute(
f"CREATE VIEW manifest AS SELECT * FROM read_parquet('{manifest_src}')")
return con
con.execute("LOAD httpfs") # both baked into the image at build time,
con.execute("LOAD iceberg") # as the runtime user (see Dockerfile)
host = cfg["endpoint"].split("://", 1)[-1]
con.execute(f"SET s3_endpoint='{host}'")
con.execute("SET s3_url_style='path'")
con.execute(f"SET s3_region='{cfg['region']}'")
con.execute("SET s3_access_key_id=?", [cfg["access_key"]])
con.execute("SET s3_secret_access_key=?", [cfg["secret_key"]])
# Newest metadata JSON wins (one single-page LIST of metadata/ — cheap);
# pyiceberg names them NNNNN-uuid.metadata.json, so lexicographic max is
# the numeric max.
meta = con.execute(
f"SELECT max(file) FROM glob('s3://{cfg['bucket']}/iceberg/era5_daily/"
f"metadata/*.metadata.json')").fetchone()[0]
if meta is None:
return None # lake bucket exists but the Iceberg table doesn't yet
con.execute(f"CREATE VIEW era5_daily AS SELECT * FROM iceberg_scan('{meta}')")
con.execute(f"""CREATE VIEW manifest AS SELECT * FROM
read_parquet('s3://{cfg['bucket']}/{era5lake.MANIFEST_KEY}')""")
return con
@app.post("/query")
def query(q: Query):
sql = q.sql.strip().rstrip(";").strip()
if not sql.lower().startswith(("select", "with")) or ";" in sql \
or _FORBIDDEN.search(sql):
raise HTTPException(status_code=400,
detail="only a single SELECT statement is allowed")
con = _connect()
if con is None:
raise HTTPException(status_code=503, detail="lake not configured")
try:
out = con.execute(
f"SELECT * FROM ({sql}) LIMIT {QUERY_ROW_CAP}").fetchall()
cols = [d[0] for d in con.description]
except Exception as e: # noqa: BLE001 - surface the engine's message to the caller
raise HTTPException(status_code=400, detail=f"query failed: {e}") from e
finally:
con.close()
return {"columns": cols, "rows": out, "row_cap": QUERY_ROW_CAP}